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algorithms imaris 9 3 1 bitplane n a imagej fiji n a cell reports 45  (Oxford Instruments)


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    Oxford Instruments algorithms imaris 9 3 1 bitplane n a imagej fiji n a cell reports 45
    Algorithms Imaris 9 3 1 Bitplane N A Imagej Fiji N A Cell Reports 45, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 44244 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/algorithms+imagej+n+a/Imaris/pm41447531-268-144-145
    Average 99 stars, based on 44244 article reviews
    algorithms imaris 9 3 1 bitplane n a imagej fiji n a cell reports 45 - by Bioz Stars, 2026-09
    99/100 stars

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    Mutagenesis:

    Article Title: Spatiotemporally Controlled Myosin Relocalization and Internal Pressure Generate Sibling Cell Size Asymmetry
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Biological Samples Larval brain tissues from wild type and mutant Drosophila melanogaster strains This study N/A Chemicals, Peptides, and Recombinant Proteins Bovine Growth Serum Thermo Scientific Cat# SH3054102 Schneider’s Insect Medium Sigma-Aldrich Cat# S0146 Colcemid (MT inhibitor) Sigma-Aldrich Cat# D7385 Rho kinase inhibitor Y-27632 LClabs Cat# Y-5301 5-(N-Ethyl-N-isopropyl)amiloride (EIPA) Sigma-Aldrich Cat# A3085 Collagenase Type I Sigma-Aldrich Cat# C0130 Papain Sigma-Aldrich Cat# P4762 Chan and Gehring’s medium (Chan & Gehring 1971) Experimental Models: Organisms/strains D. melanogaster: pinsP89 (Yu et al. 2000) FBal0104444 D. melanogaster: pinsP62 (Yu et al. 2000) FBal0104445 D. melanogaster: rodH4.8 (Basto et al. 2000) FBal0014638 D. melanogaster: SqhAX3 (Jordan & Karess 1997) FBal0035707 D. melanogaster: worGal4, UAS-Cherry::Jupiter (Cabernard & Doe 2009) FBtp0040573 D. melanogaster: worGal4, UAS-Cherry::Jupiter, Sqh::GFP (Cabernard et al. 2010) FBtp0040573 D. melanogaster: Baz::GFP (Buszczak et al. 2007) D. melanogaster: worGal4, UAS-Cherry::Jupiter; Mira::GFP (Cabernard & Doe 2009) FBtp0041413 D. melanogaster: Sqh::GFP (Martin et al. 2009) FBrf0151365 D. melanogaster: UAS-Cnn::EGFP (Megraw et al. 2002) FBrf0152123 D. melanogaster: UAS-pH::EGFP Bloomington BDSC:39693 D. melanogaster: pUAST-attPPhyB::mCherry::CAAX This paper D. melanogaster: pUAST-attP-CAAX::VhhGFP4 This paper Oligonucleotides Forward primer for pUAST-attP-CAAX::VhhGFP4 AGGGAATTGGGAATTCCGCCACCATGGATCAA GTCCAACTGGTG This paper Reverse primer for pUAST-attP-CAAX::VhhGFP4 TCTTCTTTTTACGCGTGCTGGAGACGGTGACCT G This paper Forward primer for pUAST-attP-PhyB::mCherry:: CAAX GGGAATTGGGAATTCCGCCACCATGGTATCAG GTG This paper Reverse primer for pUAST-attP-PhyB::mCherry:: CAAX ACAAAGATCCTCTAGATTACATGATAACACACTT GGTTTTTG This paper Recombinant DNA pUAST-attB-CAAX::VhhGFP4 This paper pUAST-attB-PhyB::mCherry::CAAX This paper Software and Algorithms ImageJ N/A https://imagej.nih.g ov/ij/ Imaris 7.6.4 Bitplane http://www.bitplane .com/imaris MATLAB Mathworks https://www.mathw orks.com Prism GraphPad https://www.graph pad.com Matlab code to calculate curvature values This paper Matlab code to calculate deviation coefficients This paper Matlab code to extract rounding forces This paper Matlab code to calculate theoretical pressure This paper Matlab code to calculate detected pressure This paper Matlab code to corrected pressure This paper Matlab code to convert raw imaging data files into Imaris (Bitplane) file format This paper ..

    Recombinant:

    Article Title: Spatiotemporally Controlled Myosin Relocalization and Internal Pressure Generate Sibling Cell Size Asymmetry
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Biological Samples Larval brain tissues from wild type and mutant Drosophila melanogaster strains This study N/A Chemicals, Peptides, and Recombinant Proteins Bovine Growth Serum Thermo Scientific Cat# SH3054102 Schneider’s Insect Medium Sigma-Aldrich Cat# S0146 Colcemid (MT inhibitor) Sigma-Aldrich Cat# D7385 Rho kinase inhibitor Y-27632 LClabs Cat# Y-5301 5-(N-Ethyl-N-isopropyl)amiloride (EIPA) Sigma-Aldrich Cat# A3085 Collagenase Type I Sigma-Aldrich Cat# C0130 Papain Sigma-Aldrich Cat# P4762 Chan and Gehring’s medium (Chan & Gehring 1971) Experimental Models: Organisms/strains D. melanogaster: pinsP89 (Yu et al. 2000) FBal0104444 D. melanogaster: pinsP62 (Yu et al. 2000) FBal0104445 D. melanogaster: rodH4.8 (Basto et al. 2000) FBal0014638 D. melanogaster: SqhAX3 (Jordan & Karess 1997) FBal0035707 D. melanogaster: worGal4, UAS-Cherry::Jupiter (Cabernard & Doe 2009) FBtp0040573 D. melanogaster: worGal4, UAS-Cherry::Jupiter, Sqh::GFP (Cabernard et al. 2010) FBtp0040573 D. melanogaster: Baz::GFP (Buszczak et al. 2007) D. melanogaster: worGal4, UAS-Cherry::Jupiter; Mira::GFP (Cabernard & Doe 2009) FBtp0041413 D. melanogaster: Sqh::GFP (Martin et al. 2009) FBrf0151365 D. melanogaster: UAS-Cnn::EGFP (Megraw et al. 2002) FBrf0152123 D. melanogaster: UAS-pH::EGFP Bloomington BDSC:39693 D. melanogaster: pUAST-attPPhyB::mCherry::CAAX This paper D. melanogaster: pUAST-attP-CAAX::VhhGFP4 This paper Oligonucleotides Forward primer for pUAST-attP-CAAX::VhhGFP4 AGGGAATTGGGAATTCCGCCACCATGGATCAA GTCCAACTGGTG This paper Reverse primer for pUAST-attP-CAAX::VhhGFP4 TCTTCTTTTTACGCGTGCTGGAGACGGTGACCT G This paper Forward primer for pUAST-attP-PhyB::mCherry:: CAAX GGGAATTGGGAATTCCGCCACCATGGTATCAG GTG This paper Reverse primer for pUAST-attP-PhyB::mCherry:: CAAX ACAAAGATCCTCTAGATTACATGATAACACACTT GGTTTTTG This paper Recombinant DNA pUAST-attB-CAAX::VhhGFP4 This paper pUAST-attB-PhyB::mCherry::CAAX This paper Software and Algorithms ImageJ N/A https://imagej.nih.g ov/ij/ Imaris 7.6.4 Bitplane http://www.bitplane .com/imaris MATLAB Mathworks https://www.mathw orks.com Prism GraphPad https://www.graph pad.com Matlab code to calculate curvature values This paper Matlab code to calculate deviation coefficients This paper Matlab code to extract rounding forces This paper Matlab code to calculate theoretical pressure This paper Matlab code to calculate detected pressure This paper Matlab code to corrected pressure This paper Matlab code to convert raw imaging data files into Imaris (Bitplane) file format This paper ..

    Software:

    Article Title: Spatiotemporally Controlled Myosin Relocalization and Internal Pressure Generate Sibling Cell Size Asymmetry
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Biological Samples Larval brain tissues from wild type and mutant Drosophila melanogaster strains This study N/A Chemicals, Peptides, and Recombinant Proteins Bovine Growth Serum Thermo Scientific Cat# SH3054102 Schneider’s Insect Medium Sigma-Aldrich Cat# S0146 Colcemid (MT inhibitor) Sigma-Aldrich Cat# D7385 Rho kinase inhibitor Y-27632 LClabs Cat# Y-5301 5-(N-Ethyl-N-isopropyl)amiloride (EIPA) Sigma-Aldrich Cat# A3085 Collagenase Type I Sigma-Aldrich Cat# C0130 Papain Sigma-Aldrich Cat# P4762 Chan and Gehring’s medium (Chan & Gehring 1971) Experimental Models: Organisms/strains D. melanogaster: pinsP89 (Yu et al. 2000) FBal0104444 D. melanogaster: pinsP62 (Yu et al. 2000) FBal0104445 D. melanogaster: rodH4.8 (Basto et al. 2000) FBal0014638 D. melanogaster: SqhAX3 (Jordan & Karess 1997) FBal0035707 D. melanogaster: worGal4, UAS-Cherry::Jupiter (Cabernard & Doe 2009) FBtp0040573 D. melanogaster: worGal4, UAS-Cherry::Jupiter, Sqh::GFP (Cabernard et al. 2010) FBtp0040573 D. melanogaster: Baz::GFP (Buszczak et al. 2007) D. melanogaster: worGal4, UAS-Cherry::Jupiter; Mira::GFP (Cabernard & Doe 2009) FBtp0041413 D. melanogaster: Sqh::GFP (Martin et al. 2009) FBrf0151365 D. melanogaster: UAS-Cnn::EGFP (Megraw et al. 2002) FBrf0152123 D. melanogaster: UAS-pH::EGFP Bloomington BDSC:39693 D. melanogaster: pUAST-attPPhyB::mCherry::CAAX This paper D. melanogaster: pUAST-attP-CAAX::VhhGFP4 This paper Oligonucleotides Forward primer for pUAST-attP-CAAX::VhhGFP4 AGGGAATTGGGAATTCCGCCACCATGGATCAA GTCCAACTGGTG This paper Reverse primer for pUAST-attP-CAAX::VhhGFP4 TCTTCTTTTTACGCGTGCTGGAGACGGTGACCT G This paper Forward primer for pUAST-attP-PhyB::mCherry:: CAAX GGGAATTGGGAATTCCGCCACCATGGTATCAG GTG This paper Reverse primer for pUAST-attP-PhyB::mCherry:: CAAX ACAAAGATCCTCTAGATTACATGATAACACACTT GGTTTTTG This paper Recombinant DNA pUAST-attB-CAAX::VhhGFP4 This paper pUAST-attB-PhyB::mCherry::CAAX This paper Software and Algorithms ImageJ N/A https://imagej.nih.g ov/ij/ Imaris 7.6.4 Bitplane http://www.bitplane .com/imaris MATLAB Mathworks https://www.mathw orks.com Prism GraphPad https://www.graph pad.com Matlab code to calculate curvature values This paper Matlab code to calculate deviation coefficients This paper Matlab code to extract rounding forces This paper Matlab code to calculate theoretical pressure This paper Matlab code to calculate detected pressure This paper Matlab code to corrected pressure This paper Matlab code to convert raw imaging data files into Imaris (Bitplane) file format This paper ..

    Article Title: Parallel Saltational Evolution of Ultrafast Movements in Snapping Shrimp Claws.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Biological Samples Complete list of species & sources in Table ST1 N/A N/A Chemicals, Peptides, and Recombinant Proteins Bouin’s solution Sigma-Aldrich HT10132 Iodine-potassium iodide solution ‘‘Jodtinktur Hetterich’’ Teofarma s.r.l. .. PZN: 3237398 Phosphotungstic acid Sigma-Aldrich 79690 Benzyl benzoate Sigma-Aldrich 68183 Benzyl alcohol Sigma-Aldrich 305197 Isopropanol Jodtinktur Hetterich W292907 Software and Algorithms ImageJ N/A http://imagej.net Imaris 7.0.0 Bitplane AG http://www.bitplane.com/ MeshLab N/A http://www.meshlab.net/ Other 3D Printing of claws Shapeways https://www.shapeways.com ..

    Article Title: Guidance by followers ensures long-range coordination of cell migration through α-catenin mechanoperception.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Images used in Figures Mendeley data https://dx.doi.org/10.17632/7ckg3p8d7d.1 Experimental models: Organisms/strains Zebrafish AB N/A N/A Zebrafish Tg(-1.8gsc:GFP)ml1 ZIRC ZDB-ALT-051004-2 Zebrafish Tg(tbx16:EGFP) Wells et al., 2011 ZDB-TGCONSTRCT-110722-1 Oligonucleotides Morpholino Vinculin a: CGTCTTGGTATGGAAAACTGGCATC Gene Tools This paper Morpholino Vinculin b: TGGAAAACCGGCATGATGATCGCTC Gene Tools This paper Morpholino Jupa (Plakoglobin 1a): GAGCCTCTCCCATGTGCATTTCCAT Gene Tools ZDB-MRPHLNO-091103-3 Morpholino Jupb (Plakoglobin 1b): CCTCACTCATTTGCAGTGACATCAC Gene Tools This paper Morpholino E-Cadherin: TAAATCGCAGCTCTTCCTTCCAACG Gene Tools ZDB-MRPHLNO-050421-2 Morpholino a-Catenin: TAATGCTCGTCATGTTCCAAATTGC Gene Tools ZDB-MRPHLNO-120206-2 Morpholino Sox32: CAGGGAGCATCCGGTCGAGATACAT Gene Tools ZDB-MRPHLNO-051216-6 Morpholino standard control: CCTCTTACCTCAGTTACAATTTATA Gene Tools N/A pCS2+ Histone2B-mCerulean Megason lab N/A pCS2+ Histone2B-mCherry Peyrieras lab N/A pCS2+ Lifeact-mCherry Addgene 185408 pSP64T acvr1ba* Addgene 185409 pCS2+ Dsh-DEP+ Mayor lab N/A pCS2+ Rac1N17 Symes lab N/A pCS2+ PH-GFP Raz lab N/A Zf cdh1-GFP Raz lab N/A pCS2+ Zf cdh1-Dcyto-GFP Addgene 185412 pCS2+ Zf ctnna1 de Rooij lab N/A pCS2+ Zf ctnna1-GFP de Rooij lab N/A pCS2+ Zf ctnna1-DVBS de Rooij lab N/A pCS2+ Zf ctnna1L344P Addgene 185407 pCS2+ Zf GFP-vcla Addgene 185410 pCS2+ Zf GFP-vclb Addgene 185411 pBS-IISK+ gsc Bally-Cuif lab N/A pBS-IISK+ tbxta Thisse lab N/A pBS-IISK+ ctslb ZIRC ZDB-EST-010914-13 Antibodies a-Catenin Sigma-Aldrich Cat# C2081; RRID: AB_476830 a-Tubulin DM1a Cell Signaling Technology Cat# 3873; RRID: AB_1904178 E-Cadherin BD Biosciences Cat# 610181; RRID: AB_397580 Plakoglobin BD Biosciences Cat# 610253; RRID: AB_397648 Vinculin Sigma-Aldrich Cat# V9131; RRID: AB_477629 (Continued on next page) Developmental Cell 57, 1529–1544.e1–e5, June 20, 2022 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER IRDye 680RD Goat anti-Rabbit IgG Li-Cor Biosciences Cat# 925-68071; RRID: AB_2721181 IRDye 800CW Goat anti-Mouse IgG Li-Cor Biosciences Cat# 925-32210; RRID: AB_2687825 Software and algorithms ImageJ N/A https://imagej.nih.gov/ij/ Matlab Math Works N/A IMARIS Bitplane N/A R N/A https://www.r-project.org/ InDesign Adobe N/A Premiere Pro Adobe N/A Morpheus Starruß et al., 2014 https://morpheus.gitlab.io/ Morpheus model This paper https://identifiers.org/morpheus/M0006 ll Article ..

    Imaging:

    Article Title: Spatiotemporally Controlled Myosin Relocalization and Internal Pressure Generate Sibling Cell Size Asymmetry
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Biological Samples Larval brain tissues from wild type and mutant Drosophila melanogaster strains This study N/A Chemicals, Peptides, and Recombinant Proteins Bovine Growth Serum Thermo Scientific Cat# SH3054102 Schneider’s Insect Medium Sigma-Aldrich Cat# S0146 Colcemid (MT inhibitor) Sigma-Aldrich Cat# D7385 Rho kinase inhibitor Y-27632 LClabs Cat# Y-5301 5-(N-Ethyl-N-isopropyl)amiloride (EIPA) Sigma-Aldrich Cat# A3085 Collagenase Type I Sigma-Aldrich Cat# C0130 Papain Sigma-Aldrich Cat# P4762 Chan and Gehring’s medium (Chan & Gehring 1971) Experimental Models: Organisms/strains D. melanogaster: pinsP89 (Yu et al. 2000) FBal0104444 D. melanogaster: pinsP62 (Yu et al. 2000) FBal0104445 D. melanogaster: rodH4.8 (Basto et al. 2000) FBal0014638 D. melanogaster: SqhAX3 (Jordan & Karess 1997) FBal0035707 D. melanogaster: worGal4, UAS-Cherry::Jupiter (Cabernard & Doe 2009) FBtp0040573 D. melanogaster: worGal4, UAS-Cherry::Jupiter, Sqh::GFP (Cabernard et al. 2010) FBtp0040573 D. melanogaster: Baz::GFP (Buszczak et al. 2007) D. melanogaster: worGal4, UAS-Cherry::Jupiter; Mira::GFP (Cabernard & Doe 2009) FBtp0041413 D. melanogaster: Sqh::GFP (Martin et al. 2009) FBrf0151365 D. melanogaster: UAS-Cnn::EGFP (Megraw et al. 2002) FBrf0152123 D. melanogaster: UAS-pH::EGFP Bloomington BDSC:39693 D. melanogaster: pUAST-attPPhyB::mCherry::CAAX This paper D. melanogaster: pUAST-attP-CAAX::VhhGFP4 This paper Oligonucleotides Forward primer for pUAST-attP-CAAX::VhhGFP4 AGGGAATTGGGAATTCCGCCACCATGGATCAA GTCCAACTGGTG This paper Reverse primer for pUAST-attP-CAAX::VhhGFP4 TCTTCTTTTTACGCGTGCTGGAGACGGTGACCT G This paper Forward primer for pUAST-attP-PhyB::mCherry:: CAAX GGGAATTGGGAATTCCGCCACCATGGTATCAG GTG This paper Reverse primer for pUAST-attP-PhyB::mCherry:: CAAX ACAAAGATCCTCTAGATTACATGATAACACACTT GGTTTTTG This paper Recombinant DNA pUAST-attB-CAAX::VhhGFP4 This paper pUAST-attB-PhyB::mCherry::CAAX This paper Software and Algorithms ImageJ N/A https://imagej.nih.g ov/ij/ Imaris 7.6.4 Bitplane http://www.bitplane .com/imaris MATLAB Mathworks https://www.mathw orks.com Prism GraphPad https://www.graph pad.com Matlab code to calculate curvature values This paper Matlab code to calculate deviation coefficients This paper Matlab code to extract rounding forces This paper Matlab code to calculate theoretical pressure This paper Matlab code to calculate detected pressure This paper Matlab code to corrected pressure This paper Matlab code to convert raw imaging data files into Imaris (Bitplane) file format This paper ..

    other:

    Article Title: Expanding Actin Rings Zipper the Mouse Embryo for Blastocyst Formation.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER siRNA targeting sequence: a-catenin Catna1 #6: CTGGTAAACACCAATAGTAAA QIAGEN SI02711688 siRNA targeting sequence: Myosin II Myh9 #1: CAGGGCTTATCTACACCTATT QIAGEN SI01321411 siRNA targeting sequence: Myosin II Myh9 #3: TCCAGCAAGAATGGCTTTGAA QIAGEN SI01321425 siRNA targeting sequence: ZO1 Tjp1 #6: TAGG AGATTCATTCTATATTA QIAGEN SI02688896 siRNA targeting sequence: ZO1 Tjp1 #8: CTGA ATCTATAAATTAACATA QIAGEN SI02735236 siRNA targeting sequence: Ezrin Vil2 #4: CCAG TTTAAATTCCGGGCCAA QIAGEN SI00185437 siRNA targeting sequence: Ezrin Vil2 #5: GAGG ATAGTATTTATATATAA QIAGEN SI02669163 AllStars negative control siRNA: Sequence undisclosed by QIAGEN QIAGEN SI03650318 Recombinant DNA GFP-MAP2c Michel Bornens N/A RFP-MAP2c Michel Bornens N/A GFP-UtrCH Addgene 26737 RFP-UtrCH Addgene 26739 H2B-GFP This study N/A H2B-RFP Addgene 53745 GFP-actin James Nelson N/A paGFP-actin James Nelson N/A GFP-Pard6b (Alarcon, 2010) N/A EB3-dTomato Addgene 50708 E-cad-GFP Alpha Yap N/A E-cadDICD-GFP (Samarage et al., 2015) N/A GFP-a-catenin Addgene 20139 GFP-MyoII Addgene 11347 GFP-ZO1 Addgene 30313 Ezrin-GFP Addgene 20680 Ezrin-mRuby2 This study N/A PLEKHA7-GFP (Meng et al., 2008) N/A 2G4-GFP (Cassimeris et al., 2013) N/A Occludin-Emerald Addgene 54212 Lck-GFP Addgene 61099 Lifeact-GFP (Riedl et al., 2008) N/A Emerald-Fascin Addgene 54094 Software and Algorithms ImageJ N/A https://imagej.nih.gov/ij/ Imaris 8.2 Bitplane http://www.bitplane.com/imaris MATLAB Mathworks https://www.mathworks.com/ Prism GraphPad https://www.graphpad.com/ ZEN Zeiss https://www.zeiss.com/microscopy/int/ products/microscope-software/zen-lite.html Other LabTek chambers Thermo Fisher Scientific 155411 e2 Cell 173, 1–16.e1–e5, April 19, 2018 Please cite this article in press as: Zenker et al., Expanding Actin Rings Zipper the Mouse Embryo for Blastocyst Formation, Cell (2018), https://doi.org/10.1016/j.cell.2018.02.035 Please cite this article in press as: Zenker et al., Expanding Actin Rings Zipper the Mouse Embryo for Blastocyst Formation, Cell (2018), https://doi.org/10.1016/j.cell.2018.02.035



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